Map Manager is software to annotate and analyze image volume time-series
News
Garmin has a product called MapInstall and MapManager for the Mac software version 2.1.3 as of January 5, 2010 Download (21.24 MB) It’s similar to Garmin Mapsource. Very similar to Linux. The difference is that the Garmin device is automatically mounted into the /Volume path instead of “/mnt/gps” (or whatever). Garmin MapManager is used to load the map onto your Mac. Garmin BaseCamp is used to view the map your Mac. Download and Install Garmin MapInstall and MapManager for Mac. Download the Mac version of the California Trail Map. Double click on the downloaded map file CaliforniaTrailMap.gmapi; MapManager launches and the map installation box appears. Garmin BaseCamp (Mac & Windows) is the current mapping program for use with all Garmin GPS units. It has replaced Garmin MapSource in recent time. It has replaced Garmin MapSource in recent time. In this tutorial we will help you decide if the map is easily loaded into BaseCamp and then how to open the map and see it in BaseCamp.
We are seeding Map Manager to beta testers, go to the download page to request a copy.
We have a poster at SFN 2018 in San Diego, Sunday PM poster session, Program number 254.17. You can download a copy of the poster here.
Features
- Track 3D annotations in time-series images including dendritic spines and cell bodies.
- Semi-automatically identifies corresponding annotations between time-points.
- Automatically aligns images between time-points.
- Designed to work with any 3D image volume including in vivo, ex vivo, and fixed tissue.
Analysis
- Track the dynamics of 3D annotations including persistence, addition, subtraction, and transient.
- Trajectory analysis to track the motility of annotations.
- Neuronal spine intensity analysis.
Gallery
- Please see the gallery for screenshots and movies of Map Manager in action.
Getting started
- Annotating a stack.
- Making a map.
Extending Map Manager analysis
Garmin Mapmanager
- Map Manager - Matlab - A Matlab class library to load, analyze, and plot Map Manager files. Allows for arbitrary new analysis to be easily scripted.
- PyMapManager - A Python package to load, analyze, and plot Map Manager files. Allows for arbitrary new analysis to be easily scripted.